Imaging peripheral nerves with serial block-face microscopy
PhD dissertation
Posts by Collection
portfolio
publications
Deep neural networks for A-line-based plaque classification in coronary intravascular optical coherence tomography images
Published in Journal of Medical Imaging, 2018
Developed simple deep neural network models for the task of A-line classification in intravascular OCT imaging.
Learning with fewer images via clustering: application to intravascular OCT image segmentation
Published in IEEE Access, 2021
Are there methods for choosing which images to annotate to get good network performance? We used image clustering in the latent space of a trained autoencoder to select candidate images and test this hypothesis.
Imaging peripheral nerve micro-anatomy with MUSE, 2D and 3D approaches
Published in Nature Scientific Reports, 2022
We were able to use a novel, low-cost, slide-free microscopic imaging method (MUSE) to image peripheral nerve tissues. Methods for sample preparation and imaging in 2D and 3D are discussed.
NerveTracker: a Python-based software toolkit for visualizing and tracking groups of nerve fibers in serial block-face microscopy with ultraviolet surface excitation images
Published in Jounal of Biomedical Optics, 2024
Created a software for microscopic tractography in peripheral nerves. Work inspired by similar research toolkits that process diffusion MR datasets of the brain.
talks
Talk 1 on Relevant Topic in Your Field
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Conference Proceeding talk 3 on Relevant Topic in Your Field
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teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
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Teaching experience 2
Workshop, University 1, Department, 2015
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