Sitemap
A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
Pages
Posts
Interview prep (C++)
Published:
Some pointers (pun intended) for C++ interviews.
Graph Neural Networks (Intro)
Published:
I recently got interested in learning more about graph neural network problems. The following blog posts are to help me document my learning along the way.
portfolio
Imaging peripheral nerves with serial block-face microscopy
PhD dissertation
publications
Deep neural networks for A-line-based plaque classification in coronary intravascular optical coherence tomography images
Published in Journal of Medical Imaging, 2018
Developed simple deep neural network models for the task of A-line classification in intravascular OCT imaging.
Learning with fewer images via clustering: application to intravascular OCT image segmentation
Published in IEEE Access, 2021
Are there methods for choosing which images to annotate to get good network performance? We used image clustering in the latent space of a trained autoencoder to select candidate images and test this hypothesis.
Imaging peripheral nerve micro-anatomy with MUSE, 2D and 3D approaches
Published in Nature Scientific Reports, 2022
We were able to use a novel, low-cost, slide-free microscopic imaging method (MUSE) to image peripheral nerve tissues. Methods for sample preparation and imaging in 2D and 3D are discussed.
NerveTracker: a Python-based software toolkit for visualizing and tracking groups of nerve fibers in serial block-face microscopy with ultraviolet surface excitation images
Published in Jounal of Biomedical Optics, 2024
Created a software for microscopic tractography in peripheral nerves. Work inspired by similar research toolkits that process diffusion MR datasets of the brain.
talks
Talk 1 on Relevant Topic in Your Field
Published:
This is a description of your talk, which is a markdown files that can be all markdown-ified like any other post. Yay markdown!
Conference Proceeding talk 3 on Relevant Topic in Your Field
Published:
This is a description of your conference proceedings talk, note the different field in type. You can put anything in this field.
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
This is a description of a teaching experience. You can use markdown like any other post.
Teaching experience 2
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.